Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| LGG | rs7282403 | chr21:45512276 | C/T | 3.5E-6 | 407 | 15.33 | 16.6 | 4.43 | KM Plot |
| LGG | rs72828862 | chr5:167758518 | G/A | 8.41E-7 | 401 | 15.93 | 14.53 | 16.82 | KM Plot |
| LGG | rs72828867 | chr5:167760034 | A/T | 6.37E-7 | 399 | 15.83 | 14.7 | 16.82 | KM Plot |
| LGG | rs7283041 | chr21:45568085 | A/G | 3.65E-6 | 406 | 4.43 | 15.97 | 15.47 | KM Plot |
| LGG | rs7284793 | chr22:25167911 | T/C | 0.000233 | 401 | 14.75 | 15.7 | 16.02 | KM Plot |
| LGG | rs7285660 | chr22:30222585 | C/T | 1.06E-5 | 403 | 14.92 | 18.63 | 13.97 | KM Plot |
| LGG | rs728668 | chr5:167749878 | A/G | 3.82E-8 | 407 | 15.32 | 14.7 | 15.73 | KM Plot |
| LGG | rs72867038 | chr6:56985778 | C/T | 3.55E-6 | 403 | 15.33 | 15.3 | 7.8 | KM Plot |
| LGG | rs72867054 | chr6:57009740 | A/C | 3.3E-6 | 405 | 15.33 | 15.3 | 7.8 | KM Plot |
| LGG | rs72867059 | chr6:57015050 | A/G | 3.73E-6 | 401 | 15.33 | 15.57 | 7.8 | KM Plot |
| LGG | rs72867062 | chr6:57016335 | T/G | 3.56E-6 | 402 | 15.33 | 15.43 | 7.8 | KM Plot |
| LGG | rs7287643 | chr22:45926526 | A/G | 4.94E-6 | 407 | 16.25 | 12.4 | 7.32 | KM Plot |
| LGG | rs7292416 | chr22:42807216 | G/C | 4.53E-8 | 405 | 15.33 | 16.23 | 4.4 | KM Plot |
| LGG | rs72929005 | chr2:201736668 | T/G | 1.86E-6 | 403 | 15.17 | 16.72 | 4.45 | KM Plot |
| LGG | rs72929009 | chr2:201745160 | T/C | 1.79E-6 | 405 | 15.17 | 17.2 | 4.45 | KM Plot |